rs29299042 SNP Detail

Summary

• ID
  rs29299042
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:153267199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAATTTGA AGACGATGAT
  GTACAGTTTG TGTCCTTTGG ACTTTGGGGA GCTTATTACC CTAAATTATT TAACATCTCA
  GGAACACTAG TCAAGATGCT GGTTCACAAC CCTATTGATT CAACTTGGAC CATTTCACTT
  GAATTTCAGT ATGCACAGAA CCTGATATTA TGGGCTATTT TTATGAAGCT TGTAGTTCTG
  K
  TTTTCAGTGT GATAGCTTTC AGGATTAGCT GCATGAAAGA TCCATTTCTA ATGATGCAGA
  TATATTGCTA CAAGTTCTCT ACCTTAGTTT TGGGTATTAG CAGTCTTTTT ATATTTGTTG
  CTGTGAGCTG GAACCATATG GTAGATCTTT ATGGCCAAAC TACTCTTGAC TTTCCACCCA
  AATTTCCTGT CCAGAAAGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38496714	NES09741270	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29299042					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38496714	NES09741270	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:153267199 () rs orientation: forward

Symbol	Name	Function Class
Samt4	spermatogenesis associated multipass transmembrane protein 4	Coding-NonSynonymous