rs29299319 SNP Detail

Summary

• ID
  rs29299319
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:153265998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACATGCCCT GAAATGGGAA
  TAGGCAGAGT ATTACACAAG CCACCATCTC TTGCCAACTG ATGGTTTTAA TCTTGCTGGT
  GTATCAATGT TTTCCTTACA AAGAGATCCA GTTTGTAGGT CCTTCAAACC TTCTATATAG
  GCAGAAGCAA TGTCATTGTC TATGTGATTT TGCCAACTAC TTTTCTTCCC AAGTACTAAT
  R
  GCATCCAGCA GCACATATAT TTAATGAGCA TTAATACTAC ACACAAAGAT ACGAGCTGAA
  AATTGATCTA ATTAACTTTG CACATAGTAT ATGTGGAGGC ATAGTTTGGT GTTGAAGGAG
  ACAGTTACAT AACATAGTCA TGATAATTTA TATATTTCAA TCAAATGAAG CACATACTCT
  GAAGTTGAAA CATTAGTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38496721	NES09741263	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29299319					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38496721	NES09741263	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:153265998 () rs orientation: forward

Symbol	Name	Function Class
Gm61675	predicted gene, 61675	1020 bp upstream
Samt4	spermatogenesis associated multipass transmembrane protein 4	Intron