rs29299624 SNP Detail

Summary

• ID
  rs29299624
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:153264994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAACTTGA TGAAGGGCCA
  ATTCCTCAAC AAATTATACA GTATAAGGAA ATTTTAAATT AATAAATGAA TTAGAACAAT
  GTCATATTAA AACTTTTCAC ATATGAAAGT TGTAGTAACC TCCACTTGCC TTTAAGATTA
  TTTGCATCAA TTCCAGTTCA TTGTTCATAA TCTACCATTC TTCTCTGGTG GCCATGGAAA
  Y
  ATCAGAATTT CTAGAATCAC ATTTGGTTGT CACTAATATT TGGTCTTCAT ACATACAACA
  CACAAAGAGG CAAGTATTTT ATATTTGGCA CATAGTTTTT ATTAACCATT TTAATTTTCA
  AAGGTCACTG ACATGTTTAG GCTATATCTT GAAATAATTT CCATGTGAGA AAATTCTTAA
  TGATATCATA ATGCAGGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38496726	NES09741299	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29299624					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38496726	NES09741299	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:153264994 () rs orientation: forward

Symbol	Name	Function Class
Gm61675	predicted gene, 61675	16 bp upstream
Samt4	spermatogenesis associated multipass transmembrane protein 4	4 bp upstream