rs29299626 SNP Detail

Summary

• ID
  rs29299626
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:153264655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTCTCTT CTACTGTGAA
  ATTCCATTTA AAAATTTTTC TTTGTTATGG CTTTCATAAT GTATAGTGGC TACTTGAAAA
  ATGGCAATAA TTATAAGTGA TGTCAGCTTG GTTCCAAAAG ACATATGTGG AATGTTTCAT
  TTCATGTATG AATGATAGAT TTTAAACTTT TATATATGCA TTTTAATCCA GTTACCACAG
  W
  GTTAATGTAG TTACTAATAG AATGGAGGGA AGGATCATCC AAGGAAAAGT AAATAGAGTG
  TAGTACTGAA ATGAGTAAAG AGGAATGTAG AATGTGATGG GAATGGGAGA AATGGGTAAA
  GTGGTAGAAA TGGGAATGGA AAACTTGATG AAGGGCCAAT TCCTCAACAA ATTATACAGT
  ATAAGGAAAT TTTAAATTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38496728	NES09741297	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29299626					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38496728	NES09741297	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:153264655 () rs orientation: forward

Symbol	Name	Function Class
Gm61675	predicted gene, 61675	within coordinates
Samt4	spermatogenesis associated multipass transmembrane protein 4	343 bp upstream