rs29299733 SNP Detail

Summary

• ID
  rs29299733
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:160870193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTGATAC TGTTTCTTTA
  CCTCTGACAT GAGGCTAATA GAGCAGCCCA TATTAGAGGG TTAGAGAGAA GGCTAAGTGA
  CCTCACCTAT GTGATACACC TCCAGCTGCA CATTTTCTAG ACAATAAATG AACTAGAAGC
  TTTCCTTCTT TTTATTGCCA TCATCATCAT CATCACTGTC TTCATTATCA ACTGACTCCC
  W
  GGCATGAGCT GCATCAGCTT ATAAAGCATT GAGCTGGTAA ATGAGATTAG GAAAACAGGC
  CTCTTGGGCC TCCCTCCACG GGCTCAGCCA GGCCTTCTTG CTGCCTTCCT CCATGTTTGT
  TTGGGTTTTT TCCTTTCTCC CCTAGTCTGT TCCCGTAATA ACTTCTTGAA ACTTGCAGCC
  CGTTTACAAA TCAAGGCCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss38497215	NES09723677	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs29299733					SNP	T	T	T	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38497215	NES09723677	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:160870193 () rs orientation: forward

Symbol	Name	Function Class
Nhs	NHS actin remodeling regulator	Intron
Rr694852	regulatory region 694852	1900 bp distal
Rr694853	regulatory region 694853	925 bp distal
Rr694854	regulatory region 694854	13 bp proximal
Tssr164496	transcription start site region 164496	1809 bp upstream