rs29300254 SNP Detail

Summary

• ID
  rs29300254
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:160869555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGTACAC ATTTATAGCT
  ATAGCCACTA TGTCCTAGGC ATTCTGGCAT TCACTGAAGT GAGGGAGGAA GAACCACACT
  CATTTATTTT TAAGACCTAA TTCAGTGCTT GATACAGTAG ATGCTCATTC TGAATGAATG
  AATGAATGAA TGAATACAAG TACAAGCATT TGTCTATTAA ATCATTTATA ATAAAGTTTC
  R
  TATCTAGTTT ACACATTTAT CTGCCTCTTC GAAACTCAAT GAGCTGGCTG GGTGTGGCGG
  CACATACCTA TAATCTCAGG ATCTCAAGTT GTAGAGGCAA AAGGATCATG AATTCAAAGG
  CAACCTTGAC TAAGTAGTGA GTTCAATGTC AGCCTAGTCT ACATGAGACC CTGTCTCAAA
  ACAATAGAAT TCCTCAGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss38497216	NES09723688	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs29300254					SNP	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38497216	NES09723688	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:160869555 () rs orientation: forward

Symbol	Name	Function Class
Nhs	NHS actin remodeling regulator	within coordinates
Rr694852	regulatory region 694852	1262 bp distal
Rr694853	regulatory region 694853	287 bp distal
Rr694854	regulatory region 694854	651 bp proximal
Tssr164496	transcription start site region 164496	1171 bp upstream