rs29300257 SNP Detail

Summary

• ID
  rs29300257
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:160869024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGTTCCC ATCAGGTCAT
  GTGCTCAGTT GCTCACCATC TCCCACATTA ATGTGATGGA GTCTATCCTT CCAGTCATTT
  AAATGCATCC CACCACTTTT TTTTTGGAGA GCAAAAGAAA CATGACTCCA CCTCCTCGAA
  GTCTCCTCAG ACTTGGCAAA ATGAAGATCT GGAGTCCTGC CCAGACCTAG TAAAAGCAGC
  Y
  CACTTCTCCC ATTCAGTGTC AGTAATTTAT GCATGCAATC ATTTGAAGGT TATTTGTTGA
  GCATTCACAC ATAACAGAGC CTGGGTTCCA TACTTTAGCA GTGCTTTTCA AACTTAAGCA
  TGTGTGAGGG TCACCTGGAG AAACACTAAA ATGCAAAATC CTGGTGGAGA CAGCCTCAGG
  TGGCTGATAA TCAATTACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38497219	NES09723700	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29300257					SNP	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38497219	NES09723700	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:160869024 () rs orientation: forward

Symbol	Name	Function Class
Nhs	NHS actin remodeling regulator	within coordinates
Rr694852	regulatory region 694852	731 bp distal
Rr694853	regulatory region 694853	within coordinates
Rr694854	regulatory region 694854	1182 bp proximal
Tssr164496	transcription start site region 164496	640 bp upstream