rs29300258 SNP Detail

Summary

• ID
  rs29300258
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:160868607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAGCTGT GATTACTCAT
  AAAGGCCCAC ACACCCTGTC CTTGACAAAT GTCATGCCAC AGGGTAGCTC CGGCTCTCCT
  CAAAGTCTGG ACACCAACAC TCTTGGCACG AAAGAAGGGA AAGACTAGAG AGGGAGAAAG
  AGGAAGGAAA GTAAGGTGAG AAAGCCAAAC AATTAGTTTG AAATAGACAG ATAGCAAGGC
  Y
  GTAGCACCTA TGATCTATGA TGCAGGAAGA GGGAGGAAGG ATTTAAATTG CAAGAAGTCC
  CTGGAACCAG AGTGTCAAGC ACAAGCACAC AGGCTTGTAA ACTTGTGGCT TTCACATCTT
  GCCCCAAGCC ATCTGCAAGG AGTTCTCAGA CCTTCAGTGA ACTCATCACC CCGCCCTGTT
  TTATCTCCTG GCCTTCATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss38497220	NES09723699	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs29300258					SNP	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38497220	NES09723699	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:160868607 () rs orientation: forward

Symbol	Name	Function Class
Nhs	NHS actin remodeling regulator	within coordinates
Rr694852	regulatory region 694852	314 bp distal
Rr694853	regulatory region 694853	99 bp proximal
Rr694854	regulatory region 694854	1599 bp proximal
Tssr164496	transcription start site region 164496	223 bp upstream