rs29300261 SNP Detail

Summary

• ID
  rs29300261
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:160866855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGAGGGG GGGGGAGGGG
  GAGAGGGGGA GGGGGAGAGG AGGGATGGTG AAATAATCGC AAGCCTAGAA TTTGTTGTTG
  ATTAGGACAA GAAGCTGGAA CTACCTCAAA GCCACTTCCC ATCAAAAGTT CTCCATTTTT
  CTCACTGACA TCATTCGCTT GACTTTTGAT ACCGGTATTG TGTATTTAGG CATTGGGCTA
  W
  TATGATCTAA CACATCCACA TTATCATATC CATGTGAATC TTCTCTACCA AATAAAACCA
  CTACATTCTT TGAAGGTAAG AACGTCTTTC AGTCCCTCTC AGTGCCTACT TAAGTGTTCA
  GCACATAGGC ATTGATGAGA AACACTATTA GGAGCTGGGG TAACGGTAGA CGGTAGCATG
  ATAGCCTGAG TTCAGATCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38497223	NES09723718	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29300261					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38497223	NES09723718	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:160866855 () rs orientation: forward

Symbol	Name	Function Class
Nhs	NHS actin remodeling regulator	within coordinates
Rr694852	regulatory region 694852	1302 bp proximal
Rr694853	regulatory region 694853	1851 bp proximal
Tssr164496	transcription start site region 164496	1525 bp downstream