rs29300917 SNP Detail

Summary

• ID
  rs29300917
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:153929509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCAGACTC ATTGTGTTAT
  CAGCATTTAC CTCCATTCAA AGCTTCCTTT GTAGATCTCA CAGAATTGCC TGCCCTCTCA
  CAGAAAGAAA TCATCATTCT GACCACTTAA ACATGTCCTT TTTTTTTTTA ATGAAAGGCT
  GCTGCTTCCC ATTCCTTCTT TCATGAATGT GCTAAAGCTT TACAAAATCA AGTCCAGCTA
  Y
  CACAGGTACG AGCTCAGAGA ATTACTTTAT CCTCTACCTT GAGATGCTTT CCACCATTTC
  AAGAAGTGTC AAGGCCTGTG GTCTTCATCC AAATGATCTT TGGCAACCTG ATGTTACTCA
  TGTGAATTTC TTTGTACATT CTAAATACAA CTGTGTTTGT GTTGATAACT TTCCAGGGAT
  TATTTATGCT ACTGGTCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38495860	NES09734183	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29300917					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38495860	NES09734183	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:153929509 () rs orientation: forward

Symbol	Name	Function Class
Rr3369	regulatory region 3369	1309 bp distal
Rr10542	regulatory region 10542	1416 bp distal