rs29301289 SNP Detail

Summary

• ID
  rs29301289
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:153927821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGTTGAC AGAACAAAAG
  CATGCCAGAA TGTTGGCACA GAGGATCATA AAGCGCAGAA TCTAAGTGCT TCAAATGTGT
  AAAAAGAGGA CACTACCAAA AATAATGGAA ACAAAAACTT GCTAATAAAC CTCAGTATAA
  TAGGACTTCC TCTCCCCCTC CCCCTCCCCC TCCCCGCCTC CAAAAAATAG GTCAAAATGT
  R
  AAAAGGGCCA ATCATTGTGA TCTAGAACTG ATGACAAAGG CAATCCAATT TGGGGGCATG
  GGAAAGTTAA CGCCAGGGGG CAGCAAGATG ACACAAACAG GTCCTCTCAC ACTGTCAGCT
  TAGACTTCCA ATGCTCAGGC CCAATAACAG CTATAATAGA CTCAACCAAG CTGCCAAATC
  CACAGCAGTG CTCCTAAACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38495872	NES09734170	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	A	A		A	A	A	A	A	G	A	A	G
ss46506307	mCV23894517	ABI	CRAMUS_MOUSE	f	SNP	A	G					A		A
ss134512374	ENSMUSSNP1233623	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29301289					SNP	A	G	A	G	A	A	A	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38495872	NES09734170	PERLEGEN	MM_PANEL	f	SNP	A/G