rs29301553 SNP Detail

Summary

• ID
  rs29301553
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:154046830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGCAGGCCT CGGACCCATG TCAAGTCTGT CAGGTTTCAA
  CTTTTCTAGT GCTGGGATTT ACAGATGTAT TTTCTCGTGC CCAGTTTAGA ACATGCCTTT
  R
  ATAAGCAGCA AGGCCTTGTA ATGAAAGTGC ACCCTTGGAC CACATAGGCC ATTTTGGTAG
  ATCTAATTTC CAACTGGCAC AGTTAAGGAG CATGGTCTTT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss38495685	NES09731607	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs29301553					SNP	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38495685	NES09731607	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:154046830 () rs orientation: forward

Symbol	Name	Function Class
Acot9	acyl-CoA thioesterase 9	within coordinates
Cpgi23012	CpG island 23012	1051 bp distal
Rr8395	regulatory region 8395	229 bp distal
Rr9388	regulatory region 9388	771 bp proximal
Rr395811	regulatory region 395811	110 bp downstream
Tssr162420	transcription start site region 162420	1376 bp downstream
Tssr162421	transcription start site region 162421	1353 bp downstream
Tssr162422	transcription start site region 162422	1312 bp downstream
Tssr162423	transcription start site region 162423	1290 bp downstream