rs29301685 SNP Detail

Summary

• ID
  rs29301685
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:153925979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCCTGGTG TCCTGACCAT
  CCATGGAATA TCTGATTCAG AATGTTCTAT AAGGACCAGT TTTACTAAAT ATTTAATCCT
  TTGGAACCAG ATGAAGCTAG TCATACAGCC TTACCAAAAG TAAAAGGAAG GTCCAGAAAA
  CTCTCTCCTA AGTCCAGTAC ACCTCCTCTG CTTAATTCTC TGCTAAGTGG CAATGCAATA
  R
  ATGATCCACG CCCATGAAGG GTCCCAATAT AACATATATA GAGATATAAA AACAAAAATA
  TTACAGAGAA TGGGGTTCAG AGCCATTTAA AAAATACTAT CCTTTTGTCT AAGCTCTAAA
  CTTTGACTCT GTAACTCCTT TCATGAGTAT TTTGCTCCCT ATTCTAAGGA GGAATGAAAT
  ATCCACCCAT TGGTCTTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38495878	NES09734228	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	G		A	G	G	G	A	A	G	A	A
ss46485640	mCV23894533	ABI	CRAMUS_MOUSE	f	SNP		A					G		G
ss134512368	ENSMUSSNP3984686	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29301685					SNP	G	A	G	A	G	G	G	A	G	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38495878	NES09734228	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:153925979 () rs orientation: forward

Symbol	Name	Function Class
Rr3369	regulatory region 3369	1622 bp proximal
Rr10542	regulatory region 10542	1774 bp proximal