rs29301686 SNP Detail

Summary

• ID
  rs29301686
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:153925848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTATGTA AGGGGTATAT GGGAGAGTTT GAAAGGATGA
  AAAGGTATGA AGAAATGTAA TGAAAATATA ATCTTAAAAT TAGAAACTGT TGTCCCTGGT
  GTCCTGACCA TCCATGGAAT ATCTGATTCA GAATGTTCTA TAAGGACCAG TTTTACTAAA
  W
  ATTTAATCCT TTGGAACCAG ATGAAGCTAG TCATACAGCC TTACCAAAAG TAAAAGGAAG
  GTCCAGAAAA CTCTCTCCTA AGTCCAGTAC ACCTCCTCTG CTTAATTCTC TGCTAAGTGG
  CAATGCAATA GATGATCCAC GCCCATGAAG GGTCCCAATA TAACATATAT AGAGATATAA
  AAACAAAAAT ATTACAGAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38495879	NES09734227	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	T		T	T	T	T	T	A	T	A
ss46481065	mCV23894534	ABI	CRAMUS_MOUSE	f	SNP		A			T
ss134512365	ENSMUSSNP4920573	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29301686					SNP	T	A	A	T	T	T	T	T	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38495879	NES09734227	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:153925848 () rs orientation: forward

Symbol	Name	Function Class
Rr3369	regulatory region 3369	1753 bp proximal
Rr10542	regulatory region 10542	1905 bp proximal