rs29301974 SNP Detail

Summary

• ID
  rs29301974
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:154045559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             ACCTAGAAGG TGGGAACCAA GATTCAGTCC GGCGCGGTTG CCGGTGTTTG
  R
  AGGTGTCCTC ACGCTCACGC TCTTCTGCTA CCGGTTTGTC TCTACCCGGG           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MOLF/EiJ	NOD/ShiLtJ
ss38495686	NES09731659	PERLEGEN	MM_PANEL2	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	MOLF/EiJ	NOD/ShiLtJ
rs29301974					SNP	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38495686	NES09731659	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:154045559 () rs orientation: forward

Symbol	Name	Function Class
Acot9	acyl-CoA thioesterase 9	within coordinates
Cpgi23012	CpG island 23012	within coordinates
Rr8395	regulatory region 8395	within coordinates
Rr395811	regulatory region 395811	within coordinates
Tssr162420	transcription start site region 162420	105 bp downstream
Tssr162421	transcription start site region 162421	82 bp downstream
Tssr162422	transcription start site region 162422	41 bp downstream
Tssr162423	transcription start site region 162423	19 bp downstream