rs29301975 SNP Detail

Summary

• ID
  rs29301975
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:154045245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGCCTAAA CCTCACTTCA
  GCCCTGGTTG GCCTCTAAGT GGTAGCAATT CTCTTGCCTC AGTCTTCCTA CTTCTGGGAA
  AATAAGCAGG GTACCCATAT TTTGAAAAGC TGCTCATATG ATGCCAAGGG CAAGAACTAC
  AGACTGGGAG TAAAGGTTCA AGTGTCAAAA ATAAAAGAGT TCTACCAAGG TGGAGGAACG
  W
  GGTGCTTTGC TGAGTGGTTC ATTTACTTAA CAATGGAGGG AAGAGCCCTG CTTATAAATA
  AGTCTCCGAC CCCACCTAGC TGATTGAGTG GGAAATTCCA TTGTCTCGGT CTCCAGTCTC
  CAGCTGCAGA CCAATCAAAT AGCAGGACCC GCCATTCTCT ACGCAGAAGT CCCGCCCCCT
  GGCGGCACAG CCCTACCCCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MOLF/EiJ	NOD/ShiLtJ
ss38495687	NES09731657	PERLEGEN	MM_PANEL2	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	MOLF/EiJ	NOD/ShiLtJ
rs29301975					SNP	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38495687	NES09731657	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:154045245 () rs orientation: forward

Symbol	Name	Function Class
Acot9	acyl-CoA thioesterase 9	194 bp upstream
Cpgi23012	CpG island 23012	101 bp proximal
Rr8395	regulatory region 8395	within coordinates
Rr395811	regulatory region 395811	within coordinates
Tssr162420	transcription start site region 162420	198 bp upstream
Tssr162421	transcription start site region 162421	211 bp upstream
Tssr162422	transcription start site region 162422	262 bp upstream
Tssr162423	transcription start site region 162423	282 bp upstream