rs29302454 SNP Detail

Summary

• ID
  rs29302454
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:154287493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCAACTTT TGTAGAGGTG
  GCAATGACAA ACTTCTGGTG TGTTCTGCTC AGAGGAACTC TGTTGATGAC AAGAGGTCCA
  GTCACAAGCA GCAAGCCACT GTCCAGCTGC TACAAGAAAA CCACTCTCTT GCCCCTGTGG
  CGCCCAGTGA GGATGATCAG GACAGTTCCG GGAGTGATGC TGGAGTGTTA GCCTTCTCAC
  R
  TGCTGGCTGA AGGGCTTCTT GCCATGGCTC AGCAGCTTCC GAGGCACATC TTCGGTGGAA
  TAATACCTAG GCATTTTTGG AAGCTACACC ACCCTGGTGC CACCGTTCTT GTCCACACCA
  ACTGTTTTGG TGACAGTATC AAGGCCCTTC TCCTTTTTCT TCTTCTCAAC CTTGGTCTTG
  GCAGCCGAGT ATTTTCTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38495197	NES09747553	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29302454					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38495197	NES09747553	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:154287493 () rs orientation: forward

Symbol	Name	Function Class
Gm8606	predicted gene 8606	within coordinates
Tssr164442	transcription start site region 164442	441 bp downstream