rs29304028 SNP Detail

Summary

• ID
  rs29304028
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:160213056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAACCCA AAACCCTAAG
  CCATTCCCCC AGTTTTACCT TTAAACATTG TGATTAGTGA TGGAGACATA TTCATCAGAT
  ATTTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTTT TAGTGGTGAA AACTGATACT GTTCAAAATT AGGGCTATGA AGAACAGAAA
  Y
  ATTCCAGTCT GAGTAGCTAT AGAGGGAATA CTTGGAAAAT GCCTTCCTTT GGGGCTCTGC
  CTACCCTTCC TGGAGTTTTA GCTTCCTTCT GTTTCTGAGC ATCCCATGGA GATACGTCTC
  TCACCTCCAT CCTGCTCCTG AGCTCATACC CTGCATTTTT TTTATTTCTT TGTTTCATCC
  CTCCCTATCA GCTTTACACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38499000	NES09729677	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29304028					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38499000	NES09729677	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:160213056 () rs orientation: forward

Symbol	Name	Function Class
DXMit121	DNA segment, Chr X, Massachusetts Institute of Technology 121	18 bp distal
DXMit121.1	DNA segment, Chr X, Massachusetts Institute of Technology 121.1	163 bp distal
Rr395859	regulatory region 395859	1071 bp upstream