rs29304142 SNP Detail

Summary

• ID
  rs29304142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:159115908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTGCCAA GGTGGGATAA
  CATTCTAAGG ACTAAGATAT GCCTTTAGTC TTGGATGTAT GGAGTTTAGG AAATCTCAGC
  TAGAGCAAAC CCAGAAGGCT GGCCAGCTGA GGCAAAGATG CCATGAGGGA AGACTGATGC
  AAAACATCTG GGCCAGTTTT GGCAGCCACC CTGAAAAACC ATTTGGGGAG AAAGGCTATG
  Y
  GAAAGTGTTC ACACCCACAG TATAATTTGG GGAAATATCT TTTGCATTAT ATTTGATACT
  AGAATGAACA AATTTTATTT CCCTACTGGG AGATTTTGAT TTCTAACGTC CTGTAAAAGC
  AAACGTTGTT GTCTCCGTTT TTCCTTGTGA ACATCTATGG TTGTTAAATT GCTTTAGAAT
  AAAGGGCTGA AAATAGACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38501714	NES09726035	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		T	T	C	T
ss134520438	ENSMUSSNP7131589	ENSEMBL	ENSEMBL_Sanger	f	SNP		T								C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29304142					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38501714	NES09726035	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:159115908 () rs orientation: forward

Symbol	Name	Function Class
Gm39548	predicted gene, 39548	within coordinates