rs29304143 SNP Detail

Summary

• ID
  rs29304143
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:159115864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTTTTTT TTTTTTTTAA
  TAGCTATGGT TACCAGCAAG CCAGAGCTTG CCAAGGTGGG ATAACATTCT AAGGACTAAG
  ATATGCCTTT AGTCTTGGAT GTATGGAGTT TAGGAAATCT CAGCTAGAGC AAACCCAGAA
  GGCTGGCCAG CTGAGGCAAA GATGCCATGA GGGAAGACTG ATGCAAAACA TCTGGGCCAG
  K
  TTTGGCAGCC ACCCTGAAAA ACCATTTGGG GAGAAAGGCT ATGTGAAAGT GTTCACACCC
  ACAGTATAAT TTGGGGAAAT ATCTTTTGCA TTATATTTGA TACTAGAATG AACAAATTTT
  ATTTCCCTAC TGGGAGATTT TGATTTCTAA CGTCCTGTAA AAGCAAACGT TGTTGTCTCC
  GTTTTTCCTT GTGAACATCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38501715	NES09726034	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G		T	T	G	T
ss134520435	ENSMUSSNP5930332	ENSEMBL	ENSEMBL_Sanger	f	SNP		T									G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29304143					SNP	T	T	T	T	T	T	T	T	T	G	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38501715	NES09726034	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:159115864 () rs orientation: forward

Symbol	Name	Function Class
Gm39548	predicted gene, 39548	within coordinates