rs29304316 SNP Detail

Summary

• ID
  rs29304316
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:159814341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGTAGGA GCCAATCTTG
  TAGAACCAGG GGTAATTACT CAATAGGGCC TAGGCCCATT GGCTAGCCCC CAGGATGGAG
  ATGCTGTGGC TGCAGCCCTT GCTGCTTGCC CCACTGGGAG GCAAAGAGCA TGGGGCCGTG
  GTGCTACCTA CAGGCTACAA ATTACAAAGG TAGTAGAGCC CAGCAAGCCT TGGGGTGGCC
  S
  ACATCAATTG GTAGCATCCT GGAGGTAGCA TAGAGACTCC CCCAAGATGC CCTGCTTAGC
  CTCGGGATCA CTCTGACTCT GGGTAACAAG AGGATATCTG AGATGAGTCA CAGCAATGGT
  CCAGTATTTT ATGGTATGTC AGAAGCCAAA GACCTTGAAC CAGATCAATG ACTCACAGCA
  ATCAATGTTT GCATGTAAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38499808	NES09729837	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29304316					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38499808	NES09729837	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:159814341 () rs orientation: forward

Symbol	Name	Function Class
Rr694799	regulatory region 694799	888 bp distal
Rr694800	regulatory region 694800	1996 bp proximal