rs29304391 SNP Detail

Summary

• ID
  rs29304391
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:159112987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACTTCCA GGCAACTGGG
  GTGAGAGTTT TAAACCCACA CCCACAGTGA CACACCTATA CCAACCAGGT CACACCTATT
  CCATCAAGGC CACACCTCCA GATGGTGCCA CTCCCTGGTC CAAGAATATA CAAACCATCA
  CAAGTACTTA GCAATTACTC ATTATGAATG TTGTTAAAAT AACAGATAAC TTTATTGCTA
  S
  TTCCTATGTG TCATGTAATG TATTCCCTAT GGGGGAGATA ACATTTTTTA TCCAATGACT
  TTTTTTTCTG TCAGTAGTAA TTTCCAATTT TTAAAAAACA TTCACGCAAT ATCTGCTGAT
  CATACTTTTT TCTTCCCTAA CTCTGTCCAG ATCCCCCCCT CCCCCTACCT CCTCACCCAC
  CAACTGGATT CTTTCTCTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38501723	NES09726057	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29304391					SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38501723	NES09726057	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:159112987 () rs orientation: forward

Symbol	Name	Function Class
Gm39548	predicted gene, 39548	within coordinates