rs29304720 SNP Detail

Summary

• ID
  rs29304720
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:158491802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCCAAAGC CCCAAGCCCC ACAGACTTGC CTGAGAGTGT
  AAGTAGGCCA TAAGTCTGCT TTGATTGTTA TGTCTGCATC TTTTGTAGTC TTTTTTTTTT
  K
  TTGCCTGACA ACTTTGTAAG CCCAGAGGGA GACATGAGGG GGGAGTCTGC TCTGCAGTCT
  AGTACTTCCT CCCATTTAGA TCCAGGTCTT AGTTCTCTTG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38503712	NES09730395	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T	G	G	G	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29304720					SNP	G	G	G	T	G	G	G	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38503712	NES09730395	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:158491802 () rs orientation: forward

Symbol	Name	Function Class
Rr8413	regulatory region 8413	within coordinates
Rr8414	regulatory region 8414	1398 bp proximal
Rr395842	regulatory region 395842	within coordinates
Sh3kbp1	SH3-domain kinase binding protein 1	within coordinates
Tssr162513	transcription start site region 162513	194 bp downstream
Tssr162514	transcription start site region 162514	164 bp downstream
Tssr162515	transcription start site region 162515	146 bp downstream