rs29304721 SNP Detail

Summary

• ID
  rs29304721
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:158491389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGAACGGA TGTTGAAGAA
  AGCAAACACC ATATGCCCTT TGTTTCCGTG CATGTCTCCT TCTGGAGGCC TGGGTGGAGT
  GTCTCAGCTG TCTCAAATAA TCTCCATTTT GCTCTTACTG CAGACTGCAG TTCCCCCAGC
  TTGCTTCTTT CTGATGTTAA TTATCATTTC TTCCTAATGG GTTGGCTCTT CCTCCTCTTT
  R
  GTGGTAAAGG TTCCCCTCTC TCCTGTGCCA GAGATTGGGT TAATTTTGAA AAATGCATTT
  CACTTGATTT GTGACAGAAG TAAGAGAGTG CAGAGAATTA AAGAAACAAA ACAAAACAAA
  ACGCACCAGC CTGAGTGTGT AGTGGGAGGG GCAGGAGGCT TGACTATGGG ACAGGATGCT
  TAGAATAATT CTGCTGCCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38503713	NES09730394	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29304721					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38503713	NES09730394	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:158491389 () rs orientation: forward

Symbol	Name	Function Class
Rr8413	regulatory region 8413	11 bp proximal
Rr8414	regulatory region 8414	1811 bp proximal
Rr395842	regulatory region 395842	within coordinates
Sh3kbp1	SH3-domain kinase binding protein 1	within coordinates
Tssr162513	transcription start site region 162513	200 bp upstream
Tssr162514	transcription start site region 162514	221 bp upstream
Tssr162515	transcription start site region 162515	262 bp upstream