rs29305065 SNP Detail

Summary

• ID
  rs29305065
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:158954716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC AGAGAGAGAG
  AGAGAGAGAG AGACAGAGAG AGACAGAGAG AGAGACAGAG AGAGAGACAG AGAGAGAGAC
  ACACAGAGAG ATTTAATTAA TAAAGCAATA ATATGTTCCT ATATGTTTGT ATCTTGCAAG
  GAACACCGGG GGGGGGGGGG TTCATGAATG TCAGGCAAGT ACTCCACCTG TTAGCCACAT
  M
  TCCAGCCCCT ACTTTTTATA TTAAAAAACA AACAGGCAGA TGGATTTTCC TATTTGCAAT
  CAATAGCATG TTAGCCTTGA ACACTGGGAT GCTTGTGATG CTTCACCAGT GCAGAGTGAG
  GCTGCATGTG GGTTTAGGAC ATGTTTGTCA GATATGTATC TGGATTTCTA AGGACCCTGT
  GTTTGCTGTT TCTGACTTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38502217	NES09727242	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29305065					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38502217	NES09727242	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:158954716 () rs orientation: forward

Symbol	Name	Function Class
Rr3474	regulatory region 3474	1116 bp distal
Rr5628	regulatory region 5628	1116 bp distal