rs29305067 SNP Detail

Summary

• ID
  rs29305067
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:158952491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTATGATCT AAATATATTG
  CATGAAAAAA TTCTTCATTA AAAATGTGTG TGTATTATAG TGATATAAAA ATGCATAAAA
  TGACAAAACT ATTGTATAAA CATAAGCTTT GCTCATTTAT ACAGTATATA TTTTTATACC
  TTTCTCTTCT CCTTTCCTTA TTTTAAATAT CTATGTTTTT GCTATATGTA AGTATTTAAA
  R
  CTTATGCAAG TATGAGGGCC AGTTTGATGG AAGGGCACTT GCTGTTAGCA TTCTGTATAA
  ACTCCACCCC ACAGTTACCT GGCAACAGCC AGGTAGGCTT GACCCACTAT AAAAGGGGCT
  GCTTGCCCCC TCCTCCCTCT CTTGTTCTCT TGTTTCTCTC TTGCTCTCTT GGGCTCTTCC
  CTTCCCCCCT CCCTTCACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38502219	NES09727255	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29305067					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38502219	NES09727255	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:158952491 () rs orientation: forward

Symbol	Name	Function Class
Rr3474	regulatory region 3474	510 bp proximal
Rr5628	regulatory region 5628	310 bp proximal
Rr7001	regulatory region 7001	1575 bp distal
Rr9438	regulatory region 9438	1892 bp distal