rs29305068 SNP Detail

Summary

• ID
  rs29305068
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:158952455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGAGAGG ATCTGGGAGG
  AATTGGAAGA TGAGAAACTA TGATCTAAAT ATATTGCATG AAAAAATTCT TCATTAAAAA
  TGTGTGTGTA TTATAGTGAT ATAAAAATGC ATAAAATGAC AAAACTATTG TATAAACATA
  AGCTTTGCTC ATTTATACAG TATATATTTT TATACCTTTC TCTTCTCCTT TCCTTATTTT
  R
  AATATCTATG TTTTTGCTAT ATGTAAGTAT TTAAAGCTTA TGCAAGTATG AGGGCCAGTT
  TGATGGAAGG GCACTTGCTG TTAGCATTCT GTATAAACTC CACCCCACAG TTACCTGGCA
  ACAGCCAGGT AGGCTTGACC CACTATAAAA GGGGCTGCTT GCCCCCTCCT CCCTCTCTTG
  TTCTCTTGTT TCTCTCTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ
ss38502220	NES09727254	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ
rs29305068					SNP	A	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38502220	NES09727254	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:158952455 () rs orientation: forward

Symbol	Name	Function Class
Rr3474	regulatory region 3474	546 bp proximal
Rr5628	regulatory region 5628	346 bp proximal
Rr7001	regulatory region 7001	1539 bp distal
Rr9438	regulatory region 9438	1856 bp distal