rs29305177 SNP Detail

Summary

• ID
  rs29305177
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:158574227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGATGCTT TCTACTAGAT
  TTATGAATGT AAAACCAAAT GTTACAAAGG ATGGAGTCAA GTAAAAGGAA GCCCTCCTGT
  AAAGCAGGTC TCTGCCTATC ACACCCATGT TGTACACAAG GAAACTGATG CCAAGGGCCT
  ATGGTAGTTG TACATGGGAG CCCTCTGGCT CTGTGTCTCT ACTACCTTTT GAGCTGCAGG
  M
  ATTTTTGACA TGACCATAAT GCTTCCAGTG TGAACTATGT GTCTATGAGC AGGAAAATCA
  CAGCTCATAT TAGCCTTTCA CAGTATTTTA CATAGCATTT TTATAAGATA GTTGAGGTGG
  AAAACATTTC ATGAGTTCTT CATGTGCATG ACACCAGAAT TACAGATGTG GCTTTTGAAC
  ATCAGAGTAT AGCATGGTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38503419	NES09730109	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29305177					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38503419	NES09730109	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:158574227 () rs orientation: forward

Symbol	Name	Function Class
Rr5620	regulatory region 5620	227 bp distal
Sh3kbp1	SH3-domain kinase binding protein 1	within coordinates