rs29305198 SNP Detail

Summary

• ID
  rs29305198
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:158256800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCAGTGG GTCAGTAAAA
  TGGTTTGCTT GCTAAAGGTG CTTACCATAA AAGCCTGGCT ACCTGAGTTT GATCCCAGGA
  ACTCACCTAA AAGTGGAAGG ATTGTCCTCT GACCACTATA CATGTACCAT TGCACACATC
  CCCTCTTCAT GAACACACAT ATAGAAATAA TAAAAGAGTG AATCAGTAAC AACCTAATTC
  M
  GAAGTAGAGT GGAAAGGTAT AATGTTACTT AGAAGTTTTT CTATGCAGGA TTACATAAGA
  TCATCTTCAT GCAAGTATAT AATGTTTTTT GAGCATATAT CCCTCAGTGT AACATTTGAG
  TGGAGACCTA CCTATATGAA GTGAGGATCA GGCCTCAGTT GGAGCCTTCT TCATCTGAAG
  CTTGTTTGCA TTATATCAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38504220	NES09734574	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29305198					SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38504220	NES09734574	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:158256800 () rs orientation: forward

Symbol	Name	Function Class
Map7d2	MAP7 domain containing 2	within coordinates
Tssr162488	transcription start site region 162488	950 bp downstream
Tssr162489	transcription start site region 162489	923 bp downstream