rs29305200 SNP Detail

Summary

• ID
  rs29305200
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:158256315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATGAAGG ACCATTTATA
  AGTTCATTGC TTGGTAACAT ATATAGGACT CATATTTGCC AAGATTATAT GTTCATCGTT
  TTCTCTTTAA AGCCTTCAAT TCTGTTTTTC TCTTCCTTAT TCCCTCTGGA ATTATCCTTT
  TTCTTCTGAT GAACCAGGTC TAGCTCTAGA TTGAAGTGAT TGCATTATTT GTGGGCACCT
  R
  CTCACCATCT TTCATTATTG GAGCTTAGCA ATTTTGTTTT GGAGACATAG TCTCCAAAAC
  CAAGTTCTCG TGACCTTGAA CTGATCTTTC TGTCTCTGAT TCTACAGTGT TGAGATAATA
  GGTATATGTT ATCACACGAC ACAATATTTT CCAATAAAAC ACATAATTTT CATTAGGGAT
  AGATAAACTC AACAAGGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38504222	NES09734626	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29305200					SNP	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38504222	NES09734626	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:158256315 () rs orientation: forward

Symbol	Name	Function Class
Map7d2	MAP7 domain containing 2	within coordinates
Tssr162488	transcription start site region 162488	465 bp downstream
Tssr162489	transcription start site region 162489	438 bp downstream