rs29305657 SNP Detail

Summary

• ID
  rs29305657
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:158571889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTATATG TGAAAAAAAA
  AAAAAAAAGA AGACACTTGG CAAGTAGCCT CATGAACACT GTGCCCACGA GGCTATTTTA
  GATCCCGATT CGTGAGGTCA CCTGAAGTGG TTCTTTGGTT GTCGTGTGCA TCTCCATTCA
  CCTATGAGAC ATTCCAGTGA ACAGATTCCA ACTGTATGTT TACTCCTTTA TTTGATAATT
  W
  AAAAAAAATG TTCTTTTGTG TTTCCTTGGA AACCACAAGT TTGAAAGCAG GAATTAAAGA
  TTCTTCACTA GTGAAACCTA TAGACCCTCT CATAAAGGTG GTGTTTATAA ACTAATTGAA
  TCTGTAAGAT TGCAAAGGAA AACAACCACA TCACTGCAGT TATCCAAATA TTGCAGAAAC
  ATGTGATGCG TGCTCTTGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
ss38503429	NES09730116	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
rs29305657					SNP	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38503429	NES09730116	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:158571889 () rs orientation: forward

Symbol	Name	Function Class
Rr5620	regulatory region 5620	1912 bp proximal
Sh3kbp1	SH3-domain kinase binding protein 1	within coordinates