rs29305965 SNP Detail

Summary

• ID
  rs29305965
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:159934443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTATCAAG TGTAAGAGAT
  ACCCAGGTTT GCACACAACA TAACACACGC ACACAAACAC AGACACACAC AAACACACAC
  ACAGAGAGAC AGAGAGAGAG GCAGAGACAG TCAGAGCTGA AATAGAGACA TATAGAGGGA
  AGGAAGGAGA TAGTTACACA GAAAGACTGG AATTGATTTT GTTTTATGTT TCCTCTTCTT
  W
  AGTGTGTCCC TGTGCCTAGT AGCCCTTGTG CTTCAGACAG GTATAGAGAT TTCCAAAGAG
  AGCTATCTGA GCTTTCTGGA GTTGATTTTT TCAATGTGCC CTGTTGGTTT TTGGATCAAA
  AATGTTTGCC ATTTTCAGAA CCAAGCCGCT TATGGAGTTG TCTCCTTGAT TTTTGTATGT
  GTTTGTGGGT TTTCCCAGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38499537	NES09728983	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29305965					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38499537	NES09728983	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:159934443 () rs orientation: forward

Symbol	Name	Function Class
Rr3508	regulatory region 3508	1443 bp distal
Scml2	Scm polycomb group protein like 2	within coordinates