rs29306500 SNP Detail

Summary

• ID
  rs29306500
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:158726277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCACAGGT ACCAATGCCA
  TTCTCCCCTC CTTAATGTGT GAGCAGCAAG CAAGTGGACA GAATGAGAAG GACACACACT
  GATTATTAAA TGTCTGGACT TGTGTTTTTA ATATAGGGGT GACAGTCCAA AGATTGACTT
  GGCAGGCAGC GCACTCTCTG GCATCCTGGA TAAGGACCTC TCAGACCGCA GCAATGATAT
  Y
  GGTGAGTGAA GACTTAACTT GTTCTGCTTC TCTTTGCATT GTTAGGAAAG AACTTCAGGG
  CCTGGCTTGC CTCTTCAAGC AATGTGATGG GCTCTATTGT GGCCACTGAA ACGCTAGGCT
  CTCAGCCTCC GCTGAGTTTT AAACTGTCAC TGTTTGACAG GGGAAGTAAA TGATTTGATT
  TCTACCTGAA AACGAAGTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38502852	NES09728939	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29306500					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38502852	NES09728939	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:158726277 () rs orientation: forward

Symbol	Name	Function Class
Rr694730	regulatory region 694730	within coordinates
Sh3kbp1	SH3-domain kinase binding protein 1	within coordinates
Tssr162526	transcription start site region 162526	1569 bp downstream
Tssr162527	transcription start site region 162527	576 bp downstream
Tssr162528	transcription start site region 162528	411 bp downstream
Tssr162529	transcription start site region 162529	379 bp downstream
Tssr162530	transcription start site region 162530	362 bp downstream
Tssr162531	transcription start site region 162531	336 bp downstream
Tssr162532	transcription start site region 162532	305 bp downstream
Tssr162533	transcription start site region 162533	287 bp downstream
Tssr162534	transcription start site region 162534	248 bp downstream
Tssr162535	transcription start site region 162535	224 bp downstream
Tssr162536	transcription start site region 162536	176 bp downstream
Tssr162537	transcription start site region 162537	1127 bp upstream