rs29307244 SNP Detail

Summary

• ID
  rs29307244
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:159931626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTATATCC TTTGTTCTGT
  GTGGCCAGAA TTCATGGATT TCTTTTTTTC CCTGGTGGCT GCTGCCTACA AAGTGATGGG
  TGCCATTAGG TAGCAGTGAT TAAACTTTTC TCCTGATTTT ATACTTTCAG TCAATGTCTT
  TCTGATTTTC TCCCTTGCCC AATTTTCCTC CACAATATCT TTCCTTCGCT TTCTATCCTT
  Y
  ATTCCCCTCC TGTCCTTTCT TTTGACCATT GACTTGTCCC ACACCCTTGT CTTTTGTCCA
  TTGCCACCTC CTTTCCTGCC TCTTCTGTTT ACTCCTTCTT TCGCCCTCTT TCTCCATATC
  CACAGCATGT TCCTCCTTTC CCCTTTAATG GTTATGTCTT TGTTCCCCTT TCTTATTGCA
  CTTCCCCACT TTGAGTGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38499557	NES09729036	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29307244					SNP	T	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38499557	NES09729036	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:159931626 () rs orientation: forward

Symbol	Name	Function Class
Rr3508	regulatory region 3508	1175 bp proximal
Scml2	Scm polycomb group protein like 2	within coordinates