rs29308616 SNP Detail

Summary

• ID
  rs29308616
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:158494460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTTTTCC CTGCCTCACT
  GTGTGCTCAC AAATGTTAGT GGTTTGTTCT CCTCACAGTG TCAGCTGGTC ATGCGGCTGC
  TCAGCCTTGG TGCTGCCTTT TTCTCTGTAT AATTCCTTTC CGTTTCTCCC CTGCTGGTAA
  AGAACCTAGT TCAGGGTACT GTATAAATGG AAACAAGGCT GGAGTCCGTG TCCAAGCAAG
  W
  CTCTGTGGCA GCCTGCTCAC CACATCACTG ACATCTTCAC ACCAATTCTA GGAGTAGATA
  ATGTTAACCC CACCCTAGAG TTACCAAAAT GGAGGCGAAG TGAAATTCGA TGACTTATTC
  CCAGGCACAT ATGTTGAAAT CAGCTGGGAT TAGAATTGAC TCAGTTTGCC TTTTAACTCT
  ACTTGTTGGC ATACTTTTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38503698	NES09730389	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29308616					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38503698	NES09730389	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:158494460 () rs orientation: forward

Symbol	Name	Function Class
Rr8413	regulatory region 8413	1459 bp distal
Rr8414	regulatory region 8414	859 bp distal
Rr9419	regulatory region 9419	within coordinates
Rr9420	regulatory region 9420	1541 bp proximal
Sh3kbp1	SH3-domain kinase binding protein 1	within coordinates