rs29308617 SNP Detail

Summary

• ID
  rs29308617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:158494333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCATCTC TTGCCAAGAG
  TAATGGGAAA AACCCTATTA TCTTGGAAAG TGGTTTTCCC TCTGGTCAGA ATCCAAAGCC
  AAATGATTTA TCACCAAATG CGGGGGCGTG GAGGGGGGGG GGAAGCATGG CTTTTCCCTG
  CCTCACTGTG TGCTCACAAA TGTTAGTGGT TTGTTCTCCT CACAGTGTCA GCTGGTCATG
  Y
  GGCTGCTCAG CCTTGGTGCT GCCTTTTTCT CTGTATAATT CCTTTCCGTT TCTCCCCTGC
  TGGTAAAGAA CCTAGTTCAG GGTACTGTAT AAATGGAAAC AAGGCTGGAG TCCGTGTCCA
  AGCAAGTCTC TGTGGCAGCC TGCTCACCAC ATCACTGACA TCTTCACACC AATTCTAGGA
  GTAGATAATG TTAACCCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38503699	NES09730388	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29308617					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38503699	NES09730388	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:158494333 () rs orientation: forward

Symbol	Name	Function Class
Rr8413	regulatory region 8413	1332 bp distal
Rr8414	regulatory region 8414	732 bp distal
Rr9419	regulatory region 9419	68 bp proximal
Rr9420	regulatory region 9420	1668 bp proximal
Sh3kbp1	SH3-domain kinase binding protein 1	within coordinates