rs29308619 SNP Detail

Summary

• ID
  rs29308619
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:158493978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACACTCA GCAAGTATTT
  GTCACATAGG AGGGTTTCGT GAAGGAGCTT TAGTTAGTTT GTGATTGTTG CAAGCTGATC
  AAGATGGGTT TGCCCTTTCT GTAGCCGAGC CTCCCCCACT GCCTGATGAA TCTGCTTTCA
  AAAGAGTGTA GGCACTTGGG GAACATGGAG ACTCCAGGCT CTGGTCCCCT CTCTGCGAGC
  M
  CTTGGCGGGT ATCGGACTCA CCCTCTGTTT TAAGCATTAT TATTATTAAT TTTTTTGTTC
  TCAAAATGAA AACCACCTGT CTTTAAAGTG ATTTGCTTAA AACAAATTCT TCATTTCTTT
  ACTAAGGCGT TTACCCCCAG CCCCCTTCTG CCTTTTTCCA TCTCTTGCCA AGAGTAATGG
  GAAAAACCCT ATTATCTTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38503701	NES09730386	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29308619					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38503701	NES09730386	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:158493978 () rs orientation: forward

Symbol	Name	Function Class
Rr8413	regulatory region 8413	977 bp distal
Rr8414	regulatory region 8414	377 bp distal
Rr9419	regulatory region 9419	423 bp proximal
Rr395842	regulatory region 395842	1946 bp downstream
Sh3kbp1	SH3-domain kinase binding protein 1	within coordinates