rs29308622 SNP Detail

Summary

• ID
  rs29308622
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:158493534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTTTTGC CGACCTTTTC
  AGCCTTAGCA AGGGTCACCT TCCTGTTTGG AGATTCCCTT CCATCAAAGA TTTCCTTGTG
  CCTAGCCCCC CGCTGTGTTC TTTCCTGCCT CTAGACCCAG GCACTTGTGG TTCTCCAGGT
  CAGGAATGCC CTTTCCTTGC TATCTGGCTG GTCTAGCTGG CTTTTCTTTT GGGTGTTACC
  Y
  GGAGCAGCAG CGCTGCTGGG CTTATCTTTT CCAAAGGGAC TTCCTTTCTT TCTCTCTTTC
  ACATCACCAT GATTATTTCT TGGGGAGTCC TTGGAGCACA CCCTATAAAG GTTTTGTTGA
  CCTGTTGACT CACTTAGCAC TTGCTATCTC CCAGACTAGA AATTTAGTTC TTCTAAGTCA
  GGAACTCAGT TTGTTTTATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38503704	NES09730403	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29308622					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38503704	NES09730403	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:158493534 () rs orientation: forward

Symbol	Name	Function Class
Rr8413	regulatory region 8413	533 bp distal
Rr8414	regulatory region 8414	within coordinates
Rr9419	regulatory region 9419	867 bp proximal
Rr395842	regulatory region 395842	1502 bp downstream
Sh3kbp1	SH3-domain kinase binding protein 1	within coordinates
Tssr162513	transcription start site region 162513	1926 bp downstream
Tssr162514	transcription start site region 162514	1896 bp downstream
Tssr162515	transcription start site region 162515	1878 bp downstream