rs29310195 SNP Detail

Summary

• ID
  rs29310195
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:156481587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTTCATC AAAAAAGCCA
  TGTTCAATAC AAAGAGCCTT AGGATTTGGA AAAAAAAAAG TCTTTCCAGG TACCTAATCT
  TGCCCCTTGC CAAACCTAAA AGTAGCCATT CCCCTTTGTT TTATTCTCTT CTTCTGTCTC
  CTTTGTGTCA AGCTCTAAGG TTAATGCATC AATAAAAGCA AGGAAAGCCA AGTTAGCAAC
  R
  TCTCCACGGC CAGCAACCAT GCCAGCTCGT CTGTTTTTAA CCACGTTTGA CCTACAAACT
  AGGACAATGG CTTATAGTTT GATGTTATGG TATAATTATA TTATTTGGTG ACTGCTTTTT
  GAGTGCTGAT TATTAATTAA CTTTAACAGC TCCCAGGTTA CTAAGCTTGG ATTCAAGCAA
  CGTCCGACAT CAGCACCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38507207	NES09662024	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	G		G
ss325987887	CHEV_X_154136523	CHEVERUD	SCREENING_POP	f	SNP											G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29310195					SNP	A	A	A	A	A	A	G	A	A	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38507207	NES09662024	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:156481587 () rs orientation: forward

Symbol	Name	Function Class
Rr8402	regulatory region 8402	413 bp proximal
Smpx	small muscle protein, X-linked	382 bp upstream
Tssr162436	transcription start site region 162436	394 bp upstream
Tssr162437	transcription start site region 162437	478 bp upstream
Tssr162438	transcription start site region 162438	522 bp upstream
Tssr162439	transcription start site region 162439	562 bp upstream
Tssr162440	transcription start site region 162440	593 bp upstream
Tssr162441	transcription start site region 162441	615 bp upstream