rs29310196 SNP Detail

Summary

• ID
  rs29310196
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:156481586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGTTCAT CAAAAAAGCC
  ATGTTCAATA CAAAGAGCCT TAGGATTTGG AAAAAAAAAA GTCTTTCCAG GTACCTAATC
  TTGCCCCTTG CCAAACCTAA AAGTAGCCAT TCCCCTTTGT TTTATTCTCT TCTTCTGTCT
  CCTTTGTGTC AAGCTCTAAG GTTAATGCAT CAATAAAAGC AAGGAAAGCC AAGTTAGCAA
  M
  ATCTCCACGG CCAGCAACCA TGCCAGCTCG TCTGTTTTTA ACCACGTTTG ACCTACAAAC
  TAGGACAATG GCTTATAGTT TGATGTTATG GTATAATTAT ATTATTTGGT GACTGCTTTT
  TGAGTGCTGA TTATTAATTA ACTTTAACAG CTCCCAGGTT ACTAAGCTTG GATTCAAGCA
  ACGTCCGACA TCAGCACCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38507208	NES09662023	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29310196					SNP	C	C	C	C	C	C	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38507208	NES09662023	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:156481586 () rs orientation: forward

Symbol	Name	Function Class
Rr8402	regulatory region 8402	414 bp proximal
Smpx	small muscle protein, X-linked	383 bp upstream
Tssr162436	transcription start site region 162436	395 bp upstream
Tssr162437	transcription start site region 162437	479 bp upstream
Tssr162438	transcription start site region 162438	523 bp upstream
Tssr162439	transcription start site region 162439	563 bp upstream
Tssr162440	transcription start site region 162440	594 bp upstream
Tssr162441	transcription start site region 162441	616 bp upstream