rs29310197 SNP Detail

Summary

• ID
  rs29310197
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:156481534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATGCCCT TCCCGAAGGG
  AAACTTTATG TGAAGTTAAT TTCAGAGACT AAAGAAGTTC ATCAAAAAAG CCATGTTCAA
  TACAAAGAGC CTTAGGATTT GGAAAAAAAA AAGTCTTTCC AGGTACCTAA TCTTGCCCCT
  TGCCAAACCT AAAAGTAGCC ATTCCCCTTT GTTTTATTCT CTTCTTCTGT CTCCTTTGTG
  Y
  CAAGCTCTAA GGTTAATGCA TCAATAAAAG CAAGGAAAGC CAAGTTAGCA ACATCTCCAC
  GGCCAGCAAC CATGCCAGCT CGTCTGTTTT TAACCACGTT TGACCTACAA ACTAGGACAA
  TGGCTTATAG TTTGATGTTA TGGTATAATT ATATTATTTG GTGACTGCTT TTTGAGTGCT
  GATTATTAAT TAACTTTAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38507209	NES09662022	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	C	C	C		C
ss325987886	CHEV_X_154136470	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29310197					SNP	T	T	T	T	T	T	C	T	T	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38507209	NES09662022	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:156481534 () rs orientation: forward

Symbol	Name	Function Class
Rr8402	regulatory region 8402	466 bp proximal
Smpx	small muscle protein, X-linked	435 bp upstream
Tssr162436	transcription start site region 162436	447 bp upstream
Tssr162437	transcription start site region 162437	531 bp upstream
Tssr162438	transcription start site region 162438	575 bp upstream
Tssr162439	transcription start site region 162439	615 bp upstream
Tssr162440	transcription start site region 162440	646 bp upstream
Tssr162441	transcription start site region 162441	668 bp upstream