rs29310198 SNP Detail

Summary

• ID
  rs29310198
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:156481384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTTATGT TTAAGTTATT
  GTTTTGTTGA GATAGGATCA CTCTCCATAG CCCTGGCTGC CTGGAACTCA TTATGTAGAC
  TAGACAGATC TTAAACCACA GAGGTATACC TGCTTCTGCC TCCTGGATGC CAGAATTAAA
  GGTGTGAGCC ACCATGCCCT TCCCGAAGGG AAACTTTATG TGAAGTTAAT TTCAGAGACT
  R
  AAGAAGTTCA TCAAAAAAGC CATGTTCAAT ACAAAGAGCC TTAGGATTTG GAAAAAAAAA
  AGTCTTTCCA GGTACCTAAT CTTGCCCCTT GCCAAACCTA AAAGTAGCCA TTCCCCTTTG
  TTTTATTCTC TTCTTCTGTC TCCTTTGTGT CAAGCTCTAA GGTTAATGCA TCAATAAAAG
  CAAGGAAAGC CAAGTTAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38507210	NES09662021	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29310198					SNP	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38507210	NES09662021	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:156481384 () rs orientation: forward

Symbol	Name	Function Class
Rr8402	regulatory region 8402	616 bp proximal
Smpx	small muscle protein, X-linked	585 bp upstream
Tssr162436	transcription start site region 162436	597 bp upstream
Tssr162437	transcription start site region 162437	681 bp upstream
Tssr162438	transcription start site region 162438	725 bp upstream
Tssr162439	transcription start site region 162439	765 bp upstream
Tssr162440	transcription start site region 162440	796 bp upstream
Tssr162441	transcription start site region 162441	818 bp upstream