rs29310199 SNP Detail

Summary

• ID
  rs29310199
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:156481158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCAGTGAC TTCACCCCTG
  ACCAGGACGT GGTGCTTGAC TCAGAGAATT TAAAGCTTCT TTTCCTCACA TAGCAAGAAT
  GGTTGATGAT GTCTGGTGCT GAGAATGTCC TGTCATGATG GTTTGAAGTG TGGTCACCCA
  GGGGATATAT TTTAAATCTG TCTATTCTGC TGAGTGTTTC TACCAAAGGG AAGATGGTTT
  W
  GTGTGGTAGC TCTTCATTTT TCTTGATGTT TATGTTTAAG TTATTGTTTT GTTGAGATAG
  GATCACTCTC CATAGCCCTG GCTGCCTGGA ACTCATTATG TAGACTAGAC AGATCTTAAA
  CCACAGAGGT ATACCTGCTT CTGCCTCCTG GATGCCAGAA TTAAAGGTGT GAGCCACCAT
  GCCCTTCCCG AAGGGAAACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38507211	NES09662045	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29310199					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38507211	NES09662045	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:156481158 () rs orientation: forward

Symbol	Name	Function Class
Rr8402	regulatory region 8402	842 bp proximal
Smpx	small muscle protein, X-linked	811 bp upstream
Tssr162436	transcription start site region 162436	823 bp upstream
Tssr162437	transcription start site region 162437	907 bp upstream
Tssr162438	transcription start site region 162438	951 bp upstream
Tssr162439	transcription start site region 162439	991 bp upstream
Tssr162440	transcription start site region 162440	1022 bp upstream
Tssr162441	transcription start site region 162441	1044 bp upstream