rs29310233 SNP Detail

Summary

• ID
  rs29310233
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:67973428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCC ATTGGCTTTG ACTCTCATTT
  R
  CATAACATTA GGGAGGTAGC TTTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38514102	mCV24239196	ABI	CRAMUS_MOUSE	f	SNP		G	G			A		G
ss47873583	NES11931377	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G		G	G	G	G		G	A	G		G
ss147146175	ENSMUSSNP7202009	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					G
ss323351603	CHEV_10_67600346	CHEVERUD	SCREENING_POP	f	SNP											G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29310233					SNP	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47873583	NES11931377	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:67973428 () rs orientation: forward

Symbol	Name	Function Class
Arid5b	AT-rich interaction domain 5B	within coordinates
Cpgi1679	CpG island 1679	905 bp distal
Rr384864	regulatory region 384864	within coordinates
Rr433197	regulatory region 433197	983 bp distal
Rr433198	regulatory region 433198	1043 bp distal
Rr433199	regulatory region 433199	482 bp distal
Rr433200	regulatory region 433200	581 bp proximal
Rr433201	regulatory region 433201	1662 bp proximal
Tssr3230	transcription start site region 3230	862 bp upstream
Tssr3231	transcription start site region 3231	841 bp upstream
Tssr3232	transcription start site region 3232	764 bp upstream
Tssr93877	transcription start site region 93877	571 bp downstream
Tssr93878	transcription start site region 93878	184 bp upstream
Tssr97991	transcription start site region 97991	986 bp upstream
Tssr97992	transcription start site region 97992	974 bp upstream
Tssr97993	transcription start site region 97993	960 bp upstream
Tssr97994	transcription start site region 97994	921 bp upstream
Tssr97995	transcription start site region 97995	902 bp upstream
Tssr97996	transcription start site region 97996	890 bp upstream
Tssr97997	transcription start site region 97997	876 bp upstream
Tssr97998	transcription start site region 97998	816 bp upstream
Tssr97999	transcription start site region 97999	390 bp upstream
Tssr98000	transcription start site region 98000	224 bp upstream