rs29313462 SNP Detail

Summary

• ID
  rs29313462
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:156485296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACAGCTAT AAAAAAACAG
  GCTAGAGCCA GGTTCATTAG TGTTCTTTGT TCCTTTAGCT CCAGCAAACC ATAGCCTATA
  TCTCCAGGTG GGCTTTGGTT CCCGTGCTCA ACGTTAGGAC TCCGGTGTTT AAAGAAGGTT
  TGAGAAAAAA AAAGTGCTTC TCCATTTTGA GGATCTGATA TGGTCATGGA ATTCTACTTT
  S
  TTTCTAAGAT TGTTCCACCG AAGAAAGATA GTTCCAGAAC ATTCTGGCTT CTATTGTTTC
  TATAATCTAG GCTTGTTGGG GATGGTTGGG TGGGACACAT ATGAAGATTA AAGAACTCGG
  CTCTTCAAAG AGTCTCCAAA TGTCTTCAAA GGTTGCTGGG AGAAGATATA TTCGCACAGC
  TGAGAGAGTA TTCCAAGGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38507195	NES09661962	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	G	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29313462					SNP	C	C	C	G	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38507195	NES09661962	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:156485296 () rs orientation: forward

Symbol	Name	Function Class
Rr8402	regulatory region 8402	1295 bp distal
Rr8403	regulatory region 8403	within coordinates
Smpx	small muscle protein, X-linked	within coordinates
Tssr162442	transcription start site region 162442	189 bp upstream
Tssr162443	transcription start site region 162443	274 bp upstream
Tssr162444	transcription start site region 162444	463 bp upstream
Tssr162445	transcription start site region 162445	491 bp upstream
Tssr162446	transcription start site region 162446	532 bp upstream
Tssr162447	transcription start site region 162447	549 bp upstream
Tssr162448	transcription start site region 162448	568 bp upstream
Tssr162449	transcription start site region 162449	587 bp upstream
Tssr162450	transcription start site region 162450	649 bp upstream