rs29313705 SNP Detail

Summary

• ID
  rs29313705
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:156484827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCACTCAG AAGCCACGAG TTATGGCTAT TGGCATAAAT
  GAGATAAACA CCCACACCAT GCTTTAGAGT TCAGAAAGCC TGATCAGAGG AATTCTGTCA
  S
  TCAAGTCTTC CCATAGTCTG TGAAGCAGGA CCATTTTAAG GAAGAGGAAA CAGACTTAGA
  AATATTGAAT GCCAGTGCCC AAATTTCAGG GGCCTTGTGT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38507198	NES09661958	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29313705					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38507198	NES09661958	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:156484827 () rs orientation: forward

Symbol	Name	Function Class
Rr8402	regulatory region 8402	826 bp distal
Rr8403	regulatory region 8403	within coordinates
Smpx	small muscle protein, X-linked	within coordinates
Tssr162442	transcription start site region 162442	658 bp upstream
Tssr162443	transcription start site region 162443	743 bp upstream
Tssr162444	transcription start site region 162444	932 bp upstream
Tssr162445	transcription start site region 162445	960 bp upstream
Tssr162446	transcription start site region 162446	1001 bp upstream
Tssr162447	transcription start site region 162447	1018 bp upstream
Tssr162448	transcription start site region 162448	1037 bp upstream
Tssr162449	transcription start site region 162449	1056 bp upstream
Tssr162450	transcription start site region 162450	1118 bp upstream