rs29313706 SNP Detail

Summary

• ID
  rs29313706
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:156484777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAT TGGCATAAAT GAGATAAACA
  Y
  CCACACCATG CTTTAGAGTT CAGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38507199	NES09661957	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	T	C	C	C		T	T	T	T		T
ss325987889	CHEV_X_154139713	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29313706					SNP	C	C	C	T	C	C	T	C	C	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38507199	NES09661957	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:156484777 () rs orientation: forward

Symbol	Name	Function Class
Rr8402	regulatory region 8402	776 bp distal
Rr8403	regulatory region 8403	within coordinates
Smpx	small muscle protein, X-linked	within coordinates
Tssr162442	transcription start site region 162442	708 bp upstream
Tssr162443	transcription start site region 162443	793 bp upstream
Tssr162444	transcription start site region 162444	982 bp upstream
Tssr162445	transcription start site region 162445	1010 bp upstream
Tssr162446	transcription start site region 162446	1051 bp upstream
Tssr162447	transcription start site region 162447	1068 bp upstream
Tssr162448	transcription start site region 162448	1087 bp upstream
Tssr162449	transcription start site region 162449	1106 bp upstream
Tssr162450	transcription start site region 162450	1168 bp upstream