rs29313708 SNP Detail

Summary

• ID
  rs29313708
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:156483572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTCAATA TGCCTTGTCA
  GACTTGCAGT GTTTCAAATT TTAGCCAGAT TCAGCAGACA GACACAGCAG TTGCATGTTG
  TAAAGAGTAT CTCTTTGGAT GAAGAGCAGT GGCCCTGAAG TGGGTGGTGG TAGGGTAGTT
  TATAAATGCT TCTTCCATTC ACAGAAGGGG CATGCAGATG TCAAGAGAAG ATGCACTACA
  S
  GATACATCCT GATGGAGGTG AATGCCCAAC TAGGGAAACA GCCAGGGAAC ACTGTCTATT
  TTTATTCATC ACTGTGCATT GCCCTGATTT CTCTGCAAAT AATGAGGACA GCAGGAATTG
  CTGCTGAACT GATTTATACA CATATTCTCT AGCCTGATGG TGAGAAATGA GAGCGGGGAG
  AGAATTGACT TGCTTATAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38507201	NES09662031	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29313708					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38507201	NES09662031	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:156483572 () rs orientation: forward

Symbol	Name	Function Class
Rr8402	regulatory region 8402	within coordinates
Rr8403	regulatory region 8403	828 bp proximal
Smpx	small muscle protein, X-linked	within coordinates
Tssr162436	transcription start site region 162436	1563 bp downstream
Tssr162437	transcription start site region 162437	1500 bp downstream
Tssr162438	transcription start site region 162438	1442 bp downstream
Tssr162439	transcription start site region 162439	1410 bp downstream
Tssr162440	transcription start site region 162440	1371 bp downstream
Tssr162441	transcription start site region 162441	1359 bp downstream
Tssr162442	transcription start site region 162442	1913 bp upstream
Tssr162443	transcription start site region 162443	1998 bp upstream