rs29313709 SNP Detail

Summary

• ID
  rs29313709
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:156483330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCCAAAT AGCAATTGAT
  TTTCCCCTCC ATCTCTTCTT GTGAAATTAG TGATATTAAT GTTGACCAGT TTTAGAACAT
  TGGAGGGTTT TATTTAGAAG CTAGATATTA GATGCTGCCC AATCAAAAGC AAAGGGGAGG
  GGGAGTCTAC CAACCATGAC TCAGCACAAA GACCATTAAA AGTTCCCAGA GACTGCCAGG
  S
  AAACTTACCT GTGCCCAGTT GGCAAGCATC ACACGTTTAT TAAAGTCAAT ATGCCTTGTC
  AGACTTGCAG TGTTTCAAAT TTTAGCCAGA TTCAGCAGAC AGACACAGCA GTTGCATGTT
  GTAAAGAGTA TCTCTTTGGA TGAAGAGCAG TGGCCCTGAA GTGGGTGGTG GTAGGGTAGT
  TTATAAATGC TTCTTCCATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38507202	NES09662030	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29313709					SNP	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38507202	NES09662030	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:156483330 () rs orientation: forward

Symbol	Name	Function Class
Smpx	small muscle protein, X-linked	within coordinates
Tssr162436	transcription start site region 162436	1321 bp downstream
Tssr162437	transcription start site region 162437	1258 bp downstream
Tssr162438	transcription start site region 162438	1200 bp downstream
Tssr162439	transcription start site region 162439	1168 bp downstream
Tssr162440	transcription start site region 162440	1129 bp downstream
Tssr162441	transcription start site region 162441	1117 bp downstream