rs29313710 SNP Detail

Summary

• ID
  rs29313710
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:156482242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGAAGAA CAACTGTGAG
  CTATGACAGG AATTCTCTTT AACACTTTAG CCTTAAAGCG AGTTCCCTTC TAGCCCGAGC
  CAGGAGCAGC TCTCAGGACT GGAGAGAGAC AGAGCACTCC AGCTATTTCA GCCACATGAA
  AAGCACTGGA ATTGAGATCC CCGCTCAGAG GACACCGGGA GTTCCTTCTA TCCTGTAAAG
  Y
  GCTTTTTGTG TTTTTGCACC TGGCCGCCTG GGACTGTCCT CAGGCAGTAA ACCAATCCAG
  AGAGCAGGTA AGCAGAAGGA CCCAGCTTTC ACTCTCAACT TTCACAAGGA GCTTTTCTTG
  ATCCCTAACT TAAAGTAACT ACTCATAACT TTGTAGGTTG CTAAGTACTG GGTGGCTTCT
  TTGTCAATTC CCTGTACACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38507203	NES09662029	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29313710					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38507203	NES09662029	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:156482242 () rs orientation: forward

Symbol	Name	Function Class
Rr8402	regulatory region 8402	within coordinates
Smpx	small muscle protein, X-linked	within coordinates
Tssr162436	transcription start site region 162436	233 bp downstream
Tssr162437	transcription start site region 162437	170 bp downstream
Tssr162438	transcription start site region 162438	112 bp downstream
Tssr162439	transcription start site region 162439	80 bp downstream
Tssr162440	transcription start site region 162440	41 bp downstream
Tssr162441	transcription start site region 162441	29 bp downstream